Welcome to mdakit-sasa’s documentation!

This MDAKit module facilitates the calculation of Solvant Accessible Surface Area (SASA) using MDAnaysis.

Note

The underline calculation and algorithm implementation is based on Freesasa, by Simon Mitternacht (2016) FreeSASA: An open source C library for solvent accessible surface area calculation. F1000Research 5:189 (doi: 10.12688/f1000research.7931.1)

This kit is a standalone package that utilizes MDAnalysis components to addresss the specific calculation of the solvant accessible area during a molecular dynamics simulatio.

Contents:

• Getting Started
  • Installation
  • SASA analysis
• API Documentation
  • mdakit_sasa

Indices and tables

• Index

• Module Index

• Search Page